The Neuer situation can affect Bayern greatly. 'Bild' reports that the players are very annoyed with the board. Some senior figures of the squad like Lewandowski, Kimmich and Muller do not understand the decisions which are being made.
Firstly because the club signed Nubel, a young keeper who will join the club next season. There is talk in Germany of Nubel's contract including a clause which says he must play a certain number of matches. This would lead to Neuer playing less.
Secondly, the club have not agreed to the goalkeeper's requests to sign him. Although it's true that the keeper is asking for a lot of money, the rest of the footballers understand that it makes more sense to make an effort with him before bringing another one to take his place.
Thirdly, because this situation has come shortly after the team were in great form. The fact thjere is a crisis just a few weeks later has added to the frustration of the whole team.